gotran
Programmers reference:
gotran package
gotran
Docs
»
Index
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
A
add_algebraic() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_comment() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_component() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_derivative() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_indexed_expression() (gotran.CodeComponent method)
(gotran.codegeneration.CodeComponent method)
(gotran.codegeneration.codecomponent.CodeComponent method)
add_indexed_object() (gotran.CodeComponent method)
(gotran.codegeneration.CodeComponent method)
(gotran.codegeneration.codecomponent.CodeComponent method)
add_intermediate() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_iterable() (in module gotran.common)
add_log_indent() (gotran.common.Logger method)
add_logfile() (gotran.common.Logger method)
add_parameter() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_parameters() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_solve_state() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_state() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_state_solution() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
add_states() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
adict (class in gotran.common)
(class in gotran.common.dicts)
AlgebraicExpression (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
append() (gotran.model.utils.ODEObjectList method)
args() (gotran.CCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
B
basename (gotran.IndexedObject attribute)
(gotran.model.IndexedObject attribute)
(gotran.model.odeobjects.IndexedObject attribute)
begin_log() (gotran.common.Logger method)
C
camel_capitalize() (in module gotran.common)
CCodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codegenerators)
cellml2ode() (in module gotran)
(in module gotran.input)
(in module gotran.input.cellml)
CellMLParser (class in gotran)
(class in gotran.input)
(class in gotran.input.cellml)
CellModel (class in gotran)
(class in gotran.model)
(class in gotran.model.cellmodel)
check_and_register_component_variables() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
check_arg() (in module gotran.common)
check_arginlist() (in module gotran.common)
check_kwarg() (in module gotran.common)
check_method() (in module gotran.solver.odesolver)
class_code() (gotran.codegeneration.codegenerators.CppCodeGenerator method)
(gotran.CppCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CppCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
class_name (gotran.codegeneration.oderepresentation.ODERepresentation attribute)
class_name() (in module gotran)
(in module gotran.codegeneration)
(in module gotran.codegeneration.codegenerators)
ClassType (in module gotran.common)
clear() (gotran.common.dicts.odict method)
(gotran.ParameterDict method)
(gotran.common.odict method)
clear_timings() (in module gotran.common)
closure_end (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
closure_start (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
cmp() (in module gotran)
(in module gotran.model)
(in module gotran.model.odeobjects)
cmp_to_key() (in module gotran)
(in module gotran.model)
(in module gotran.model.odeobjects)
code_dict() (gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
CodeComponent (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codecomponent)
Comment (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
comment (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
comments (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
CommonSubExpressionODE (class in gotran)
(class in gotran.codegeneration)
,
[1]
(class in gotran.codegeneration.algorithmcomponents)
compile_module() (in module gotran.codegeneration.compilemodule)
component_names (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
components (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
componentwise_code() (gotran.CCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
componentwise_derivative() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
copy() (gotran.common.adict method)
(gotran.ParameterDict method)
(gotran.ScalarParam method)
(gotran.common.dicts.adict method)
count() (gotran.model.utils.ODEObjectList method)
CppCodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codegenerators)
cse() (in module gotran.codegeneration.sympy_cse)
cse_separate() (in module gotran.codegeneration.sympy_cse)
CUDACodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codegenerators)
currents (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
D
debug() (gotran.common.Logger method)
decorators() (gotran.codegeneration.codegenerators.PythonCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
default_parameters() (gotran.CellMLParser static method)
(gotran.CUDACodeGenerator static method)
(gotran.CodeComponent static method)
(gotran.IndexedObject static method)
(gotran.JuliaCodeGenerator static method)
(gotran.MatlabCodeGenerator static method)
(gotran.codegeneration.CUDACodeGenerator static method)
(gotran.codegeneration.CodeComponent static method)
(gotran.codegeneration.JuliaCodeGenerator static method)
(gotran.codegeneration.MatlabCodeGenerator static method)
(gotran.codegeneration.codecomponent.CodeComponent static method)
(gotran.codegeneration.codegenerators.CUDACodeGenerator static method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator static method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator static method)
(gotran.input.CellMLParser static method)
(gotran.input.cellml.CellMLParser static method)
(gotran.model.IndexedObject static method)
(gotran.model.odeobjects.IndexedObject static method)
dep_var (gotran.DerivativeExpression attribute)
(gotran.model.DerivativeExpression attribute)
(gotran.model.expressions.DerivativeExpression attribute)
dependent (gotran.Expression attribute)
(gotran.model.Expression attribute)
(gotran.model.expressions.Expression attribute)
deprecated() (in module gotran.common)
der_expr (gotran.DerivativeExpression attribute)
(gotran.model.DerivativeExpression attribute)
(gotran.model.expressions.DerivativeExpression attribute)
DerivativeExpression (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
diagonal_jacobian_action_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
diagonal_jacobian_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
Dt (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
E
end_log() (gotran.common.Logger method)
error() (gotran.common.Logger method)
exec_ode() (in module gotran)
(in module gotran.model)
(in module gotran.model.loadmodel)
expanded_expression() (gotran.model.ODE method)
(gotran.ODE method)
(gotran.model.ode.ODE method)
explicit_euler_solver() (in module gotran.codegeneration.solvercomponents)
ExplicitEuler (class in gotran.codegeneration.solvercomponents)
expr (gotran.Expression attribute)
(gotran.model.Expression attribute)
(gotran.model.expressions.Expression attribute)
Expression (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
extend() (gotran.model.utils.ODEObjectList method)
extract_components() (gotran.model.ODE method)
(gotran.ODE method)
(gotran.model.ode.ODE method)
F
factorized_jacobian_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
FactorizedJacobianComponent (class in gotran)
(class in gotran.codegeneration)
,
[1]
(class in gotran.codegeneration.algorithmcomponents)
field_parameters_setter_code() (gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
field_states_getter_code() (gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
field_states_setter_code() (gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
finalize() (gotran.model.ODE method)
(gotran.ODE method)
(gotran.model.ode.ODE method)
finalize_component() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
float_format() (in module gotran.common)
float_types (gotran.CCodeGenerator attribute)
(gotran.PythonCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.PythonCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.PythonCodeGenerator attribute)
flush_logger() (gotran.common.Logger method)
format() (gotran.common.Range method)
format_component_label() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_data() (gotran.ParameterDict method)
format_description() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_expr() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_global_options() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_in() (gotran.common.Range method)
format_not_in() (gotran.common.Range method)
format_options() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_packages() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_param_table_row() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_state_table_row() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
format_time() (in module gotran.common)
format_unit() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
forward_backward_subst_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
ForwardBackwardSubstitutionComponent (class in gotran)
(class in gotran.codegeneration)
,
[1]
(class in gotran.codegeneration.algorithmcomponents)
fromkeys() (gotran.ParameterDict method)
full_state_vector (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
full_states (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
function_code() (gotran.CCodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
G
gccm() (in module gotran.model.cellmodel)
generalized_rush_larsen_solver() (in module gotran.codegeneration.solvercomponents)
GeneralizedRushLarsen (class in gotran.codegeneration.solvercomponents)
generate() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
generate_components() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
generate_module() (in module gotran.solver.odesolver)
generate_parameter_table() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
generate_state_table() (gotran.codegeneration.LatexCodeGenerator method)
(gotran.LatexCodeGenerator method)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator method)
get() (gotran.model.utils.ODEObjectList method)
get_beattime() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
get_component() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
get_intermediate() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
get_iterator() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
get_log_handler() (gotran.common.Logger method)
get_log_level() (gotran.common.Logger method)
get_logfile_handler() (gotran.common.Logger method)
get_logger() (gotran.common.Logger method)
get_object() (gotran.model.ODEComponent method)
(gotran.ODEComponent method)
(gotran.model.odecomponent.ODEComponent method)
get_options() (gotran.solver.scipysolver.ScipySolver method)
(gotran.solver.sundialssolver.SundialsSolver method)
get_parameter() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
get_parents() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
get_solver_fn() (in module gotran.codegeneration.solvercomponents)
get_state() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
get_sym() (gotran.ScalarParam method)
get_time_steps() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
gotran (module)
gotran.algorithms (module)
gotran.algorithms.symbolicnewtonsolution (module)
gotran.codegeneration (module)
gotran.codegeneration.algorithmcomponents (module)
gotran.codegeneration.avoidsympycontractions (module)
gotran.codegeneration.codecomponent (module)
gotran.codegeneration.codegenerators (module)
gotran.codegeneration.compilemodule (module)
gotran.codegeneration.latexcodegenerator (module)
gotran.codegeneration.oderepresentation (module)
gotran.codegeneration.solvercomponents (module)
gotran.codegeneration.sympy_cse (module)
gotran.common (module)
gotran.common.dicts (module)
gotran.common.disk (module)
gotran.common.options (module)
gotran.input (module)
gotran.input.cellml (module)
gotran.input.mathml (module)
gotran.model (module)
gotran.model.cellmodel (module)
gotran.model.expressions (module)
gotran.model.loadmodel (module)
gotran.model.ode (module)
gotran.model.odecomponent (module)
gotran.model.odeobjects (module)
gotran.model.utils (module)
gotran.solver (module)
gotran.solver.odesolver (module)
gotran.solver.scipysolver (module)
gotran.solver.sundialssolver (module)
gotran.solver.utils (module)
GotranException
,
[1]
I
import_ode() (gotran.model.ODE method)
(gotran.ODE method)
(gotran.model.ode.ODE method)
indent (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
indent_str (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
index() (gotran.CCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.model.utils.ODEObjectList method)
indexed_objects() (gotran.CodeComponent method)
(gotran.codegeneration.CodeComponent method)
(gotran.codegeneration.codecomponent.CodeComponent method)
IndexedExpression (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
IndexedObject (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
indices (gotran.IndexedObject attribute)
(gotran.model.IndexedObject attribute)
(gotran.model.odeobjects.IndexedObject attribute)
info() (gotran.common.Logger method)
info_blue() (gotran.common.Logger method)
info_green() (gotran.common.Logger method)
info_red() (gotran.common.Logger method)
init (gotran.model.odeobjects.Parameter attribute)
(gotran.Parameter attribute)
(gotran.State attribute)
(gotran.model.Parameter attribute)
(gotran.model.State attribute)
(gotran.model.odeobjects.State attribute)
init_field_parameters_code() (gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
init_parameters_code() (gotran.CCodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
init_states_code() (gotran.CCodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
insert() (gotran.model.utils.ODEObjectList method)
Intermediate (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
intermediate_symbols (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
intermediate_unit() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
intermediates (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
is_complete (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
is_dae (gotran.model.ODE attribute)
(gotran.ODE attribute)
(gotran.model.ode.ODE attribute)
is_finalized (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
is_iterable() (in module gotran.common)
is_locally_complete (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
is_solved (gotran.model.odeobjects.State attribute)
(gotran.State attribute)
(gotran.model.State attribute)
is_state_expression (gotran.Expression attribute)
(gotran.model.Expression attribute)
(gotran.model.expressions.Expression attribute)
items() (gotran.common.dicts.odict method)
(gotran.common.odict method)
iter_componentwise_dy() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_derivative_expr() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_dy_body() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_jacobian_action_body() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_jacobian_action_expr() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_jacobian_body() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_jacobian_expr() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_linerized_body() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_linerized_expr() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_monitored_body() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_monitored_expr() (gotran.codegeneration.oderepresentation.ODERepresentation method)
iter_objects (class in gotran.model.utils)
iteritems() (gotran.common.dicts.odict method)
(gotran.common.odict method)
iterkeys() (gotran.common.dicts.odict method)
(gotran.common.odict method)
iterparameterdicts() (gotran.ParameterDict method)
iterparams() (gotran.ParameterDict method)
itervalues() (gotran.common.dicts.odict method)
(gotran.common.odict method)
J
jacobian_action_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
jacobian_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
JacobianActionComponent (class in gotran)
(class in gotran.codegeneration)
,
[1]
(class in gotran.codegeneration.algorithmcomponents)
JacobianComponent (class in gotran)
(class in gotran.codegeneration)
,
[1]
(class in gotran.codegeneration.algorithmcomponents)
JuliaCodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codegenerators)
K
keys() (gotran.common.dicts.odict method)
(gotran.common.odict method)
(gotran.model.utils.ODEObjectList method)
L
language (gotran.CCodeGenerator attribute)
(gotran.CUDACodeGenerator attribute)
(gotran.CppCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.PythonCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.CUDACodeGenerator attribute)
(gotran.codegeneration.CppCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.PythonCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CUDACodeGenerator attribute)
(gotran.codegeneration.codegenerators.CppCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.PythonCodeGenerator attribute)
LatexCodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.latexcodegenerator)
line_cont (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
line_ending (gotran.CCodeGenerator attribute)
(gotran.JuliaCodeGenerator attribute)
(gotran.MatlabCodeGenerator attribute)
(gotran.codegeneration.CCodeGenerator attribute)
(gotran.codegeneration.JuliaCodeGenerator attribute)
(gotran.codegeneration.MatlabCodeGenerator attribute)
(gotran.codegeneration.codegenerators.CCodeGenerator attribute)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator attribute)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator attribute)
linearized_derivatives() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
LinearizedDerivativeComponent (class in gotran)
(class in gotran.codegeneration)
,
[1]
(class in gotran.codegeneration.algorithmcomponents)
list_solver_options() (gotran.solver.scipysolver.ScipySolver static method)
(gotran.solver.sundialssolver.SundialsSolver static method)
list_timings() (in module gotran)
(in module gotran.common)
listwrap() (in module gotran.common)
load() (in module gotran.common)
(in module gotran.common.disk)
load_cell() (in module gotran)
(in module gotran.model)
(in module gotran.model.loadmodel)
load_ode() (in module gotran)
(in module gotran.model)
(in module gotran.model.loadmodel)
log() (gotran.common.Logger method)
Logger (class in gotran.common)
M
mass_matrix (gotran.model.ODE attribute)
(gotran.ODE attribute)
(gotran.model.ode.ODE attribute)
mass_matrix() (gotran.CCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
MathMLBaseParser (class in gotran.input.mathml)
MathMLCPPParser (class in gotran.input.mathml)
MatlabCodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codegenerators)
module (gotran.solver.odesolver.Solver attribute)
module_code() (gotran.CCodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
monitor() (gotran.solver.odesolver.Solver method)
monitor_indices() (gotran.solver.odesolver.Solver method)
monitor_name_to_index_code() (gotran.CCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
monitor_names (gotran.solver.odesolver.Solver attribute)
monitored_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
monitored_names_code() (gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
N
name (gotran.codegeneration.oderepresentation.ODERepresentation attribute)
(gotran.ODEObject attribute)
(gotran.ScalarParam attribute)
(gotran.model.ODEObject attribute)
(gotran.model.odeobjects.ODEObject attribute)
next() (gotran.model.utils.iter_objects method)
ns (gotran.model.ODE attribute)
(gotran.ODE attribute)
(gotran.model.ode.ODE attribute)
num_components (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
num_full_states (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
num_intermediates (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
num_parameters (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
num_rate_expressions (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
num_state_expressions (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
num_states (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
O
obj_name() (gotran.CCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
ODE (class in gotran)
(class in gotran.model)
(class in gotran.model.ode)
ode_components() (in module gotran.model.utils)
ode_objects() (in module gotran.model.utils)
ode_primitives() (in module gotran.model.utils)
ODEComponent (class in gotran)
(class in gotran.model)
(class in gotran.model.odecomponent)
ODEObject (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
ODEObjectList (class in gotran.model.utils)
ODERepresentation (class in gotran.codegeneration.oderepresentation)
ODESolver() (in module gotran)
(in module gotran.solver.odesolver)
ODESolverError
,
[1]
ODEValueObject (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
odict (class in gotran.common)
(class in gotran.common.dicts)
offset_str (gotran.IndexedObject attribute)
(gotran.model.IndexedObject attribute)
(gotran.model.odeobjects.IndexedObject attribute)
opt_cse() (in module gotran.codegeneration.sympy_cse)
optstr() (gotran.ParameterDict method)
P
packages (gotran.codegeneration.LatexCodeGenerator attribute)
(gotran.LatexCodeGenerator attribute)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator attribute)
param (gotran.model.odeobjects.ODEValueObject attribute)
(gotran.ODEValueObject attribute)
(gotran.model.ODEValueObject attribute)
param2value() (in module gotran.common)
param_name_to_index_code() (gotran.CCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
Parameter (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
parameter_symbols (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
parameter_values() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
ParameterDict (class in gotran)
parameters (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
parent (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
parse() (gotran.input.mathml.MathMLBaseParser method)
parse_args() (gotran.ParameterDict method)
parse_components() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
parse_connections() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
parse_documentation() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
parse_imported_model() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
parse_single_component() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
parse_units() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
pop() (gotran.common.dicts.odict method)
(gotran.ParameterDict method)
(gotran.common.odict method)
(gotran.model.utils.ODEObjectList method)
pop_log_level() (gotran.common.Logger method)
popitem() (gotran.common.dicts.odict method)
(gotran.common.odict method)
postprocess_for_cse() (in module gotran.codegeneration.sympy_cse)
preprocess_for_cse() (in module gotran.codegeneration.sympy_cse)
present_component (gotran.model.ODE attribute)
(gotran.ODE attribute)
(gotran.model.ode.ODE attribute)
present_time_str() (in module gotran.common)
(in module gotran.common.disk)
print_settings (gotran.codegeneration.LatexCodeGenerator attribute)
(gotran.LatexCodeGenerator attribute)
(gotran.codegeneration.latexcodegenerator.LatexCodeGenerator attribute)
problem (gotran.solver.sundialssolver.SundialsSolver attribute)
push_log_level() (gotran.common.Logger method)
PythonCodeGenerator (class in gotran)
(class in gotran.codegeneration)
(class in gotran.codegeneration.codegenerators)
Q
quote_join() (in module gotran.common)
R
Range (class in gotran.common)
rate_expressions (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
RateDict (class in gotran.model.utils)
RateExpression (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
recreate_expression() (in module gotran)
(in module gotran.model)
(in module gotran.model.expressions)
reduce() (in module gotran.common)
register_ode_object() (gotran.model.ODE method)
(gotran.ODE method)
(gotran.model.ode.ODE method)
remove() (gotran.model.utils.ODEObjectList method)
remove_logfile() (gotran.common.Logger method)
rename() (gotran.model.ODEObject method)
(gotran.ODEObject method)
(gotran.ODEValueObject method)
(gotran.model.ODEValueObject method)
(gotran.model.odeobjects.ODEObject method)
(gotran.model.odeobjects.ODEValueObject method)
replace_expr() (gotran.Expression method)
(gotran.model.Expression method)
(gotran.model.expressions.Expression method)
repr() (gotran.ScalarParam method)
reps_toposort() (in module gotran.codegeneration.sympy_cse)
residual_current() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
reverse() (gotran.model.utils.ODEObjectList method)
rhs_expressions() (in module gotran)
(in module gotran.codegeneration)
,
[1]
(in module gotran.codegeneration.algorithmcomponents)
rjust() (in module gotran.common)
root (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
rush_larsen_solver() (in module gotran.codegeneration.solvercomponents)
RushLarsen (class in gotran.codegeneration.solvercomponents)
S
save() (gotran.model.ODE method)
(gotran.ODE method)
(gotran.model.ode.ODE method)
(in module gotran.common)
(in module gotran.common.disk)
ScalarParam (class in gotran)
ScipySolver (class in gotran.solver.scipysolver)
set_default_exception() (gotran.common.Logger method)
set_log_handler() (gotran.common.Logger method)
set_log_indent() (gotran.common.Logger method)
set_log_level() (gotran.common.Logger method)
set_log_prefix() (gotran.common.Logger method)
set_parameter() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
set_parameter_prefix() (gotran.codegeneration.oderepresentation.ODERepresentation method)
set_raise_error() (gotran.common.Logger method)
set_residual_current() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
set_state_prefix() (gotran.codegeneration.oderepresentation.ODERepresentation method)
setdefault() (gotran.common.dicts.odict method)
(gotran.common.odict method)
shape (gotran.IndexedObject attribute)
(gotran.model.IndexedObject attribute)
(gotran.model.odeobjects.IndexedObject attribute)
signature() (gotran.codegeneration.oderepresentation.ODERepresentation method)
(gotran.ODE method)
(gotran.model.ODE method)
(gotran.model.ode.ODE method)
simplified_implicit_euler_solver() (in module gotran.codegeneration.solvercomponents)
SimplifiedImplicitEuler (class in gotran.codegeneration.solvercomponents)
simulate() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
solve() (gotran.solver.odesolver.Solver method)
Solver (class in gotran.solver.odesolver)
solver (gotran.solver.sundialssolver.SundialsSolver attribute)
solver_code() (gotran.codegeneration.codegenerators.CUDACodeGenerator method)
(gotran.CUDACodeGenerator method)
(gotran.codegeneration.CUDACodeGenerator method)
sort() (gotran.model.utils.ODEObjectList method)
sort_components() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
special_expression() (in module gotran.model.utils)
State (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
state (gotran.model.expressions.StateExpression attribute)
(gotran.StateExpression attribute)
(gotran.StateSolution attribute)
(gotran.model.StateExpression attribute)
(gotran.model.StateSolution attribute)
(gotran.model.expressions.StateSolution attribute)
state_expressions (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
state_indices() (gotran.solver.odesolver.Solver method)
state_name_to_index_code() (gotran.CCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
state_names (gotran.solver.odesolver.Solver attribute)
state_symbols (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
state_values() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
StateDerivative (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
StateExpression (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
states (gotran.model.expressions.RateExpression attribute)
(gotran.ODEComponent attribute)
(gotran.RateExpression attribute)
(gotran.model.ODEComponent attribute)
(gotran.model.RateExpression attribute)
(gotran.model.odecomponent.ODEComponent attribute)
StateSolution (class in gotran)
(class in gotran.model)
(class in gotran.model.expressions)
stimulation_parameters (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
stimulation_protocol (gotran.CellModel attribute)
(gotran.model.CellModel attribute)
(gotran.model.cellmodel.CellModel attribute)
subs() (gotran.codegeneration.oderepresentation.ODERepresentation method)
SundialsNotInstalled
SundialsSolver (class in gotran.solver.sundialssolver)
suppress_logging() (gotran.common.Logger method)
suppress_stdout_stderr (class in gotran.solver.utils)
sym (gotran.Expression attribute)
(gotran.IndexedObject attribute)
(gotran.ODEValueObject attribute)
(gotran.ScalarParam attribute)
(gotran.State attribute)
(gotran.StateDerivative attribute)
(gotran.model.Expression attribute)
(gotran.model.IndexedObject attribute)
(gotran.model.ODEValueObject attribute)
(gotran.model.State attribute)
(gotran.model.StateDerivative attribute)
(gotran.model.expressions.Expression attribute)
(gotran.model.expressions.StateDerivative attribute)
(gotran.model.odeobjects.IndexedObject attribute)
(gotran.model.odeobjects.ODEValueObject attribute)
(gotran.model.odeobjects.State attribute)
symbol_subs (gotran.codegeneration.oderepresentation.ODERepresentation attribute)
SymbolicNewtonSolution (class in gotran.algorithms)
(class in gotran.algorithms.symbolicnewtonsolution)
T
t (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
tic() (in module gotran.common)
Time (class in gotran)
(class in gotran.model)
(class in gotran.model.odeobjects)
time (gotran.model.ODEComponent attribute)
(gotran.ODEComponent attribute)
(gotran.model.odecomponent.ODEComponent attribute)
timeout() (in module gotran.solver.odesolver)
Timer (class in gotran.common)
timings() (gotran.common.Timer class method)
to_code() (gotran.CCodeGenerator method)
(gotran.CppCodeGenerator method)
(gotran.JuliaCodeGenerator method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator method)
(gotran.codegeneration.CCodeGenerator method)
(gotran.codegeneration.CppCodeGenerator method)
(gotran.codegeneration.JuliaCodeGenerator method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator method)
(gotran.codegeneration.codegenerators.CCodeGenerator method)
(gotran.codegeneration.codegenerators.CppCodeGenerator method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator method)
to_gotran() (gotran.CellMLParser method)
(gotran.input.CellMLParser method)
(gotran.input.cellml.CellMLParser method)
toc() (in module gotran.common)
tree_cse() (in module gotran.codegeneration.sympy_cse)
tuplewrap() (in module gotran.common)
type_error() (gotran.common.Logger method)
U
unit (gotran.model.odeobjects.ODEValueObject attribute)
(gotran.ODEValueObject attribute)
(gotran.ScalarParam attribute)
(gotran.model.ODEValueObject attribute)
update() (gotran.common.dicts.odict method)
(gotran.ODEValueObject method)
(gotran.ParameterDict method)
(gotran.ScalarParam method)
(gotran.common.odict method)
(gotran.model.ODEValueObject method)
(gotran.model.odeobjects.ODEValueObject method)
update_index() (gotran.codegeneration.oderepresentation.ODERepresentation method)
update_model_parameter() (gotran.solver.odesolver.Solver method)
update_parameter() (gotran.CellModel method)
(gotran.model.CellModel method)
(gotran.model.cellmodel.CellModel method)
update_unit() (gotran.Dt method)
(gotran.Time method)
(gotran.model.Dt method)
(gotran.model.Time method)
(gotran.model.odeobjects.Dt method)
(gotran.model.odeobjects.Time method)
use_parenthesis() (gotran.input.mathml.MathMLBaseParser method)
used_in_linear_dy (gotran.codegeneration.oderepresentation.ODERepresentation attribute)
used_in_monitoring (gotran.codegeneration.oderepresentation.ODERepresentation attribute)
used_in_single_dy (gotran.codegeneration.oderepresentation.ODERepresentation attribute)
V
value (gotran.model.odeobjects.ODEValueObject attribute)
(gotran.ODEValueObject attribute)
(gotran.model.ODEValueObject attribute)
value_error() (gotran.common.Logger method)
value_formatter() (in module gotran.common)
VALUE_JUST() (in module gotran.common)
values() (gotran.common.dicts.odict method)
(gotran.common.odict method)
W
warning() (gotran.common.Logger method)
wrap_body_with_function_prototype() (gotran.CCodeGenerator class method)
(gotran.CUDACodeGenerator class method)
(gotran.JuliaCodeGenerator static method)
(gotran.MatlabCodeGenerator method)
(gotran.PythonCodeGenerator static method)
(gotran.codegeneration.CCodeGenerator class method)
(gotran.codegeneration.CUDACodeGenerator class method)
(gotran.codegeneration.JuliaCodeGenerator static method)
(gotran.codegeneration.MatlabCodeGenerator method)
(gotran.codegeneration.PythonCodeGenerator static method)
(gotran.codegeneration.codegenerators.CCodeGenerator class method)
(gotran.codegeneration.codegenerators.CUDACodeGenerator class method)
(gotran.codegeneration.codegenerators.JuliaCodeGenerator static method)
(gotran.codegeneration.codegenerators.MatlabCodeGenerator method)
(gotran.codegeneration.codegenerators.PythonCodeGenerator static method)
wrap_log_message() (gotran.common.Logger method)