Software

I maintain several open source projects

cardiac-geometries
Repo Pypi
Tool for creating idealized cardiac geometries and microstructure

ap_features
Repo Pypi
Package to compute features of traces from action potential models

simcardems
Repo Pypi
Simula Cardiac ElectroMechanics Solver

gotran
Repo Pypi
Library for declaring and translating ODEs

goss
Repo Pypi
General ODE System Solver

modelgraph
Repo Pypi
A tool for visualizing dependencies between different components of your model

mps-motion
Repo Pypi
Library for tracking motion in cardiac mps data

mps
Repo Pypi
Tools for working with mps files

fenics-pulse
Repo Pypi
A software for solving problems in cardiac mechanics using FEniCS

cbcbeat
Repo Pypi
An adjoint-enabled framework for computational cardiac electrophysiology

ldrb
Repo Pypi
A software for assigning myocardial fiber orientations based on the Laplace Dirichlet Ruled-Based algorithm

fenics-plotly
Repo Pypi
Lightweight library for plotting FEniCS objects using Plotly

clang-format-docs
Repo Pypi
Run clang-format on C++ code blocks in documentation files.

pygscholar
Repo Pypi
Tool for interacting with google scholar