Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-09-05 11:48:33,935 [584] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-09-05 11:48:34,068 [584] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-09-05 11:48:34,073 [584] INFO pulse.unloader: ------------------------------------------------------------------------
2024-09-05 11:48:34,074 [584] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-09-05 11:48:34,075 [584] INFO pulse.unloader: ------------------------------------------------------------------------
2024-09-05 11:48:34,106 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:34,106 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:34,107 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:34,108 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:34,280 [584] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-09-05 11:48:35,099 [584] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-09-05 11:48:35,115 [584] INFO pulse.unloader:
Do an intial solve
2024-09-05 11:48:35,203 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:35,204 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:35,204 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:35,205 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:35,205 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:48:35,712 [584] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-09-05 11:48:35,789 [584] DEBUG UFL_LEGACY: Blocks of each mode:
2024-09-05 11:48:35,998 [584] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-09-05 11:49:14,719 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:14,719 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:14,720 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:14,720 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:14,721 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:14,907 [584] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-09-05 11:49:14,982 [584] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-09-05 11:49:15,174 [584] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-09-05 11:49:18,641 [584] INFO pulse.unloader:
Iteration: 0
2024-09-05 11:49:22,216 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-09-05 11:49:22,258 [584] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-09-05 11:49:26,531 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:49:26,536 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-09-05 11:49:26,581 [584] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-09-05 11:49:26,985 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:49:27,028 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:49:27,030 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:49:27,072 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:49:27,073 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:49:27,112 [584] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-09-05 11:49:27,266 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:27,267 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:27,267 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:27,268 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:27,268 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:49:27,566 [584] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-09-05 11:49:27,644 [584] DEBUG UFL_LEGACY: Blocks of each mode:
2024-09-05 11:49:27,855 [584] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-09-05 11:50:06,618 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:50:06,619 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:50:06,619 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:50:06,620 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:50:06,621 [584] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-09-05 11:50:06,760 [584] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-09-05 11:50:06,836 [584] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-09-05 11:50:07,027 [584] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-09-05 11:50:10,484 [584] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-09-05 11:50:10,656 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,657 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,699 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,700 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,740 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,741 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,780 [584] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-09-05 11:50:10,791 [584] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-09-05 11:50:10,792 [584] INFO pulse.unloader:
Iteration: 1
2024-09-05 11:50:10,964 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:10,965 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:11,006 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:11,007 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:11,048 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:11,049 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:11,086 [584] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-09-05 11:50:14,111 [584] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-09-05 11:50:14,282 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,283 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,325 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,326 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,368 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,369 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,406 [584] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-09-05 11:50:14,418 [584] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-09-05 11:50:14,419 [584] INFO pulse.unloader:
Iteration: 2
2024-09-05 11:50:14,590 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,592 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,633 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,635 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,676 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,677 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:14,714 [584] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-09-05 11:50:17,725 [584] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-09-05 11:50:17,897 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:17,898 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:17,941 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:17,942 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:17,984 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:17,985 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,023 [584] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-09-05 11:50:18,034 [584] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-09-05 11:50:18,035 [584] INFO pulse.unloader:
Iteration: 3
2024-09-05 11:50:18,207 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,208 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,250 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,251 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,291 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,292 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:18,329 [584] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-09-05 11:50:21,334 [584] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-09-05 11:50:21,510 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,511 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,554 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,555 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,596 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,597 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,635 [584] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-09-05 11:50:21,646 [584] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-09-05 11:50:21,647 [584] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-09-05 11:50:21,823 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,825 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,866 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,867 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,908 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-09-05 11:50:21,910 [584] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()