Index

A

a() (fenicsx_pulse.problem.DynamicProblem method) ActiveModel (class in fenicsx_pulse.active_model) (class in fenicsx_pulse.cardiac_model)

ActiveStress (class in fenicsx_pulse.active_stress) ActiveStressModels (class in fenicsx_pulse.active_stress)

B

base_center() (fenicsx_pulse.geometry.HeartGeometry method) base_center_form() (fenicsx_pulse.geometry.HeartGeometry method) BaseBC (class in fenicsx_pulse.problem)

BaseData (class in fenicsx_pulse.geometry) body_force (fenicsx_pulse.boundary_conditions.BoundaryConditions attribute) BoundaryConditions (class in fenicsx_pulse.boundary_conditions)

C

capitalize() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) CardiacGeometriesObject (class in fenicsx_pulse.geometry) CardiacModel (class in fenicsx_pulse.cardiac_model) casefold() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) Cavity (class in fenicsx_pulse.problem) center() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) centroid (fenicsx_pulse.geometry.BaseData attribute)

Compressibility (class in fenicsx_pulse.cardiac_model) (class in fenicsx_pulse.compressibility) Compressible (class in fenicsx_pulse.compressibility) Compressible2 (class in fenicsx_pulse.compressibility) compute_base_data() (in module fenicsx_pulse.geometry) count() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.boundary_conditions.BoundaryConditions method) (fenicsx_pulse.geometry.BaseData method) (fenicsx_pulse.geometry.Marker method) (fenicsx_pulse.problem.BaseBC method) (fenicsx_pulse.problem.Cavity method)

D

DeformationGradient() (in module fenicsx_pulse.kinematics) dim (fenicsx_pulse.geometry.Marker attribute)

dirichlet (fenicsx_pulse.boundary_conditions.BoundaryConditions attribute) DynamicProblem (class in fenicsx_pulse.problem)

E

encode() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) endswith() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

EngineeringStrain() (in module fenicsx_pulse.kinematics) evaluate_at_vertex_tag() (in module fenicsx_pulse.utils) expandtabs() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

F

Fe() (fenicsx_pulse.active_model.ActiveModel method) (fenicsx_pulse.active_model.Passive method) (fenicsx_pulse.active_stress.ActiveStress method) fenicsx_pulse.active_model module fenicsx_pulse.active_stress module fenicsx_pulse.boundary_conditions module fenicsx_pulse.cardiac_model module fenicsx_pulse.compressibility module fenicsx_pulse.geometry module fenicsx_pulse.invariants module fenicsx_pulse.kinematics module fenicsx_pulse.material_model module

fenicsx_pulse.material_models.guccione module fenicsx_pulse.material_models.holzapfelogden module fenicsx_pulse.material_models.linear_elastic module fenicsx_pulse.material_models.saint_venant_kirchhoff module fenicsx_pulse.problem module fenicsx_pulse.units module fenicsx_pulse.utils module fenicsx_pulse.viscoelasticity module find() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) format() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) format_map() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

G

gather_broadcast_array() (in module fenicsx_pulse.utils) Geometry (class in fenicsx_pulse.geometry) (class in fenicsx_pulse.problem)

GreenLagrangeStrain() (in module fenicsx_pulse.kinematics) Guccione (class in fenicsx_pulse.material_models.guccione)

H

HeartGeometry (class in fenicsx_pulse.geometry) HolzapfelOgden (class in fenicsx_pulse.material_models.holzapfelogden)

HyperElasticMaterial (class in fenicsx_pulse.cardiac_model) (class in fenicsx_pulse.material_model)

I

I1() (in module fenicsx_pulse.invariants) I2() (in module fenicsx_pulse.invariants) I3() (in module fenicsx_pulse.invariants) I4() (in module fenicsx_pulse.invariants) I5() (in module fenicsx_pulse.invariants) I8() (in module fenicsx_pulse.invariants) Incompressible (class in fenicsx_pulse.compressibility) index() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.boundary_conditions.BoundaryConditions method) (fenicsx_pulse.geometry.BaseData method) (fenicsx_pulse.geometry.Marker method) (fenicsx_pulse.problem.BaseBC method) (fenicsx_pulse.problem.Cavity method) interpolate() (in module fenicsx_pulse.problem) InversePiolaTransform() (in module fenicsx_pulse.kinematics) is_compressible() (fenicsx_pulse.compressibility.Compressibility method) (fenicsx_pulse.compressibility.Compressible method) (fenicsx_pulse.compressibility.Compressible2 method) (fenicsx_pulse.compressibility.Incompressible method) is_isotropic() (fenicsx_pulse.material_models.guccione.Guccione method) isalnum() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

isalpha() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isascii() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isdecimal() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isdigit() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isidentifier() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) islower() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isnumeric() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) IsochoricDeformationGradient() (in module fenicsx_pulse.kinematics) isprintable() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isspace() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) istitle() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) isupper() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

J

Jacobian() (in module fenicsx_pulse.kinematics)

join() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

L

LeftCauchyGreen() (in module fenicsx_pulse.kinematics) LinearElastic (class in fenicsx_pulse.material_models.linear_elastic) ljust() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

locator (fenicsx_pulse.geometry.Marker attribute) lower() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) lstrip() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

M

maketrans() (fenicsx_pulse.active_stress.ActiveStressModels static method) (fenicsx_pulse.problem.BaseBC static method) Marker (class in fenicsx_pulse.geometry) marker (fenicsx_pulse.geometry.Marker attribute) (fenicsx_pulse.problem.Cavity attribute) Material (class in fenicsx_pulse.material_model) module fenicsx_pulse.active_model fenicsx_pulse.active_stress fenicsx_pulse.boundary_conditions fenicsx_pulse.cardiac_model fenicsx_pulse.compressibility fenicsx_pulse.geometry fenicsx_pulse.invariants fenicsx_pulse.kinematics fenicsx_pulse.material_model fenicsx_pulse.material_models.guccione fenicsx_pulse.material_models.holzapfelogden fenicsx_pulse.material_models.linear_elastic fenicsx_pulse.material_models.saint_venant_kirchhoff fenicsx_pulse.problem fenicsx_pulse.units fenicsx_pulse.utils fenicsx_pulse.viscoelasticity

N

name (fenicsx_pulse.geometry.Marker attribute) neumann (fenicsx_pulse.boundary_conditions.BoundaryConditions attribute)

NeumannBC (class in fenicsx_pulse.boundary_conditions) NoneViscoElasticity (class in fenicsx_pulse.viscoelasticity) normal (fenicsx_pulse.geometry.BaseData attribute)

O

orthotropic_parameters() (fenicsx_pulse.material_models.holzapfelogden.HolzapfelOgden static method)

P

P() (fenicsx_pulse.material_model.HyperElasticMaterial method) (fenicsx_pulse.material_model.Material method) (fenicsx_pulse.material_models.guccione.Guccione method) (fenicsx_pulse.material_models.holzapfelogden.HolzapfelOgden method) (fenicsx_pulse.material_models.linear_elastic.LinearElastic method) (fenicsx_pulse.material_models.saint_venant_kirchhoff.SaintVenantKirchhoff method)

partition() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) partly_orthotropic_parameters() (fenicsx_pulse.material_models.holzapfelogden.HolzapfelOgden static method) Passive (class in fenicsx_pulse.active_model) PiolaTransform() (in module fenicsx_pulse.kinematics)

R

register() (fenicsx_pulse.cardiac_model.Compressibility method) (fenicsx_pulse.compressibility.Compressibility method) (fenicsx_pulse.compressibility.Compressible method) (fenicsx_pulse.compressibility.Compressible2 method) (fenicsx_pulse.compressibility.Incompressible method) removeprefix() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) removesuffix() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) replace() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) rfind() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

RightCauchyGreen() (in module fenicsx_pulse.kinematics) rindex() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) rjust() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) robin (fenicsx_pulse.boundary_conditions.BoundaryConditions attribute) RobinBC (class in fenicsx_pulse.boundary_conditions) rpartition() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) rsplit() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) rstrip() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

S

SaintVenantKirchhoff (class in fenicsx_pulse.material_models.saint_venant_kirchhoff) SecondOrderIdentity() (in module fenicsx_pulse.kinematics) sigma() (fenicsx_pulse.material_model.HyperElasticMaterial method) (fenicsx_pulse.material_model.Material method) (fenicsx_pulse.material_models.guccione.Guccione method) (fenicsx_pulse.material_models.holzapfelogden.HolzapfelOgden method) (fenicsx_pulse.material_models.linear_elastic.LinearElastic method) (fenicsx_pulse.material_models.saint_venant_kirchhoff.SaintVenantKirchhoff method) solve() (fenicsx_pulse.problem.DynamicProblem method) (fenicsx_pulse.problem.StaticProblem method) split() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) splitlines() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) startswith() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) StaticProblem (class in fenicsx_pulse.problem)

strain_energy() (fenicsx_pulse.active_model.ActiveModel method) (fenicsx_pulse.active_model.Passive method) (fenicsx_pulse.active_stress.ActiveStress method) (fenicsx_pulse.compressibility.Compressibility method) (fenicsx_pulse.compressibility.Compressible method) (fenicsx_pulse.compressibility.Compressible2 method) (fenicsx_pulse.compressibility.Incompressible method) (fenicsx_pulse.material_model.HyperElasticMaterial method) (fenicsx_pulse.material_models.guccione.Guccione method) (fenicsx_pulse.material_models.holzapfelogden.HolzapfelOgden method) (fenicsx_pulse.material_models.saint_venant_kirchhoff.SaintVenantKirchhoff method) (fenicsx_pulse.viscoelasticity.NoneViscoElasticity method) (fenicsx_pulse.viscoelasticity.ViscoElasticity method) (fenicsx_pulse.viscoelasticity.Viscous method) strip() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) swapcase() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

T

Ta (fenicsx_pulse.active_stress.ActiveStress property) title() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

translate() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method) transversely_active_stress() (in module fenicsx_pulse.active_stress) transversely_isotropic_parameters() (fenicsx_pulse.material_models.holzapfelogden.HolzapfelOgden static method)

U

unroll_dofmap() (in module fenicsx_pulse.utils) update_fields() (fenicsx_pulse.problem.DynamicProblem method)

upper() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)

V

v() (fenicsx_pulse.problem.DynamicProblem method) Variable (class in fenicsx_pulse.units) vector (fenicsx_pulse.geometry.BaseData attribute) vertex_to_dofmap() (in module fenicsx_pulse.utils) ViscoElasticity (class in fenicsx_pulse.cardiac_model) (class in fenicsx_pulse.viscoelasticity)

Viscous (class in fenicsx_pulse.viscoelasticity) volume (fenicsx_pulse.problem.Cavity attribute) volume() (fenicsx_pulse.geometry.HeartGeometry method) volume_form() (fenicsx_pulse.geometry.HeartGeometry method)

Z

zfill() (fenicsx_pulse.active_stress.ActiveStressModels method) (fenicsx_pulse.problem.BaseBC method)